Experimental genomics scripts and protocols
Please visit our lab github page for data analysis and visualization code associated with published papers and our lab wiki for other wet and dry lab protocols.
Simple fool’s guide to population genomics via RNAseq: An introduction to high-throughput sequencing data analysis: Online guide and updated scripts
You may cite the work as follows: De Wit P, Pespeni MH, Ladner JT, Barshis DJ, Seneca F, Jaris H, Overgaard Therkildsen N, Morikawa M and Palumbi SR (2012) The simple fool’s guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis. Molecular Ecology Resources 12, 1058-1067.
Also check out our invited review and synthesis on SNP genotyping and population genomics from expressed sequences – current advances and future possibilities De Wit P, Pespeni MH and Palumbi SR (2015) Molecular Ecology 24, 2310-2323
COMPASS tools and their Message Box (and another version)
How to Give a Killer Presentation by Chris Anderson of TED Talks.
Tips for Communicating Science by Maddalena Bearzi.
AAAS website for Communicating to Engage
Commonly requested data files
Population allele frequency data from larval selection in experimental acidification
Purple sea urchin, Strongylocentrotus purpuratus, BiomineralizationGeneList
Other data sets published in the Dryad repository
Career related resources for graduate students and postdocs
Spencer Hall at Indiana University has an excellent compilation of resources.