{"id":165,"date":"2015-08-04T12:37:19","date_gmt":"2015-08-04T16:37:19","guid":{"rendered":"http:\/\/blog.uvm.edu\/mpespeni\/?page_id=165"},"modified":"2023-06-29T17:33:06","modified_gmt":"2023-06-29T21:33:06","slug":"resources","status":"publish","type":"page","link":"https:\/\/blog.uvm.edu\/mpespeni\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"<h3>Experimental genomics\u00a0scripts and protocols<\/h3>\n<p>Please visit our <a href=\"https:\/\/github.com\/PespeniLab\">lab github page<\/a> for data analysis and visualization code associated with published papers and our <a href=\"https:\/\/github.com\/PespeniLab\/Lab_wiki\/wiki\">lab wiki<\/a> for other <a href=\"https:\/\/github.com\/PespeniLab\/Lab_wiki\/tree\/master\">wet and dry lab protocols<\/a>.<\/p>\n<p>Simple fool&#8217;s guide to population genomics\u00a0via RNAseq: An introduction to high-throughput sequencing data analysis: <a href=\"http:\/\/sfg.stanford.edu\/\">Online guide<\/a> and <a href=\"https:\/\/github.com\/DeWitP\/SFG\">updated scripts<\/a><\/p>\n<p>You may cite the work as follows:\u00a0De Wit P, Pespeni MH, Ladner JT<em>,\u00a0<\/em>Barshis DJ, Seneca F, Jaris H, Overgaard Therkildsen N, Morikawa M and Palumbi SR\u00a0(2012) The simple fool&#8217;s guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis.\u00a0 <em>Molecular Ecology Resources<\/em>\u00a0<strong>12<\/strong>, 1058-1067.<\/p>\n<p>Also\u00a0check out our invited review and synthesis on <a href=\"http:\/\/blog.uvm.edu\/mpespeni\/files\/2015\/08\/De-Wit-Pespeni-Palumbi-2015-SNP-genotyping-and-population-genomics-from-expressed-sequences-current-advances-and-future-possibili.pdf\">SNP genotyping and population genomics from expressed sequences &#8211; current advances and future possibilities<\/a>\u00a0De Wit P, Pespeni MH\u00a0and Palumbi SR\u00a0(2015) <em>Molecular Ecology<\/em> <strong>24<\/strong>, 2310-2323<\/p>\n<h3>Communicating Science<\/h3>\n<p><a href=\"http:\/\/www.compassonline.org\/COMPASSResources\/\">COMPASS tools<\/a> and their <a href=\"http:\/\/blog.uvm.edu\/mpespeni\/files\/2015\/08\/MBInstructions-editable.pdf\" target=\"_blank\" rel=\"noopener noreferrer\">Message Box<\/a> (and <a href=\"http:\/\/blog.uvm.edu\/mpespeni\/files\/2015\/08\/MessageBox.pdf\">another version<\/a>)<\/p>\n<p><a href=\"https:\/\/hbr.org\/2013\/06\/how-to-give-a-killer-presentation\">How to Give a Killer Presentation<\/a> by Chris Anderson of TED Talks.<\/p>\n<p><a href=\"http:\/\/voices.nationalgeographic.com\/2013\/10\/11\/5-simple-tips-for-communicating-science\/\">Tips for Communicating Science<\/a> by\u00a0Maddalena Bearzi.<\/p>\n<p>AAAS website for <a href=\"https:\/\/www.aaas.org\/page\/communicating-engage\">Communicating to Engage<\/a><\/p>\n<h3>Commonly requested data files<\/h3>\n<p><a href=\"http:\/\/datadryad.org\/resource\/doi:10.5061\/dryad.6j51n\">Population allele frequency\u00a0data<\/a> from larval selection in experimental acidification<\/p>\n<p>Purple sea urchin, Strongylocentrotus purpuratus, <a href=\"http:\/\/blog.uvm.edu\/mpespeni\/files\/2015\/08\/BiomineralizationGeneList.xlsx\">BiomineralizationGeneList<\/a><\/p>\n<p><a href=\"http:\/\/datadryad.org\/discover?query=pespeni&amp;submit=Go\">Other data sets<\/a> published in the <a href=\"http:\/\/datadryad.org\/\">Dryad repository<\/a><\/p>\n<h3>Career related resources for graduate students and postdocs<\/h3>\n<p>Spencer Hall at Indiana University has an <a href=\"http:\/\/www.indiana.edu\/~halllab\/grad-student-resources.html\">excellent compilation of resources<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Experimental genomics\u00a0scripts and protocols Please visit our lab github page for data analysis and visualization code associated with published papers and our lab wiki for other wet and dry lab protocols. Simple fool&#8217;s guide to population genomics\u00a0via RNAseq: An introduction to high-throughput sequencing data analysis: Online guide and updated scripts You may cite the work &hellip; <a href=\"https:\/\/blog.uvm.edu\/mpespeni\/resources\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Resources<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":2319,"featured_media":0,"parent":0,"menu_order":4,"comment_status":"closed","ping_status":"open","template":"","meta":{"footnotes":""},"class_list":["post-165","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/pages\/165","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/users\/2319"}],"replies":[{"embeddable":true,"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/comments?post=165"}],"version-history":[{"count":5,"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/pages\/165\/revisions"}],"predecessor-version":[{"id":523,"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/pages\/165\/revisions\/523"}],"wp:attachment":[{"href":"https:\/\/blog.uvm.edu\/mpespeni\/wp-json\/wp\/v2\/media?parent=165"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}